Stem-loop abu-mir-219-1

Accession

MI0033868

Description

Astatotilapia burtoni abu-mir-219-1 precursor miRNA

Sequence

120 reads, 38.0 reads per million, 1 experiments

UGAUUGUCCAAACGCAAUUCUUgugaaauuucaaauccaaccCGAGAAUUGUGCCUGGACAUCUGU
.(((.(((((..((((((((((((((....))).........)))))))))))..))))))))...

Structure

--U   U     AA           ---------   a 
   GAU GUCCA  CGCAAUUCUUg         uga a
   ||| |||||  |||||||||||         |||  
   CUA CAGGU  GUGUUAAGAGC         acu u
UGU   -     CC           ccaaccuaa   u 

Annotation confidence Medium

Genome context

JH425877.1: 63620-63685 [+]

Mature abu-miR-219-5p

• Accession: MIMAT0042152
• Description: Astatotilapia burtoni abu-miR-219-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-219-1-3p

• Accession: MIMAT0059859
• Description: Astatotilapia burtoni abu-miR-219-1-3p mature miRNA
• Sequence: 43 - CGAGAAUUGUGCCUGGACAUCUGU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381