miRBase entry: abu-mir-20b

Stem-loop abu-mir-20b

Accession

MI0033869

Description

Astatotilapia burtoni abu-mir-20b precursor miRNA

Sequence

CAAAGUGCUCACAGUGCAGGUAguaaacguucaucuacugcaguuugugcacuuggggu
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure

---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     uucacg gu u acguc auc    u
ugggg      u  u g     -   uacu

Annotation confidence Not enough data

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Genome context

JH425336.1: 3372127-3372185 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-20b

Accession	MIMAT0042153
Description	Astatotilapia burtoni abu-miR-20b mature miRNA
Sequence	1 - CAAAGUGCUCACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381