Stem-loop abu-mir-33-2

Accession

MI0033878

Description

Astatotilapia burtoni abu-mir-33-2 precursor miRNA

Sequence

84 reads, 27.0 reads per million, 1 experiments

GUGCAUUGUAGUUGCAUUGCAUGugugucucagcugagugCAAUGUACCUGCAGUGCAACA
.((((((((((.((((((((((..((......))...)))))))))).))))))))))...

Structure

--G          U          -Gu  gu 
   UGCAUUGUAG UGCAUUGCAU   gu  c
   |||||||||| ||||||||||   ||   
   ACGUGACGUC AUGUAACgug   cg  u
ACA          C          agu  ac 

Annotation confidence High

Genome context

JH425391.1: 1282061-1282121 [+]

Mature abu-miR-33-5p

• Accession: MIMAT0042163
• Description: Astatotilapia burtoni abu-miR-33-5p mature miRNA
• Sequence: 1 - GUGCAUUGUAGUUGCAUUGCAUG - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-33-2-3p

• Accession: MIMAT0059862
• Description: Astatotilapia burtoni abu-miR-33-2-3p mature miRNA
• Sequence: 41 - CAAUGUACCUGCAGUGCAACA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381