Stem-loop abu-mir-219-3

Accession

MI0033880

Description

Astatotilapia burtoni abu-mir-219-3 precursor miRNA

Sequence

32 reads, 10.0 reads per million, 1 experiments

UGAUUGUCCAAACGCAAUUCUUgcaugugcuuuugugaaaccaGGAGUUGUGGAUGGACAUCAC
((((.(((((..(((((((((((....(((....)))....)))))))))))..))))))))).

Structure

-    U     AA           caug   u 
 UGAU GUCCA  CGCAAUUCUUg    ugc u
 |||| |||||  |||||||||||    |||  
 ACUA CAGGU  GUGUUGAGGac    gug u
C    -     AG           caaa   u 

Annotation confidence Not enough data

Genome context

JH425855.1: 280191-280254 [-]

Mature abu-miR-219-5p

• Accession: MIMAT0042152
• Description: Astatotilapia burtoni abu-miR-219-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-219-3-3p

• Accession: MIMAT0059861
• Description: Astatotilapia burtoni abu-miR-219-3-3p mature miRNA
• Sequence: 44 - GGAGUUGUGGAUGGACAUCAC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381