Stem-loop abu-mir-196a-2

Accession

MI0033891

Description

Astatotilapia burtoni abu-mir-196a-2 precursor miRNA

Sequence

402 reads, 127.0 reads per million, 1 experiments

UAGGUAGUUUCAUGUUGUUGGGguuggcuuccUGGCUCGGCAACAAGAAACUGCcuuga
.((((((((((.((((((((((.(.((...)).).)))))))))).))))))))))...

Structure

--U          A          g u  c 
   AGGUAGUUUC UGUUGUUGGG u gg  
   |||||||||| |||||||||| | || u
   ucCGUCAAAG ACAACGGCUC G cc  
agu          A          G U  u 

Annotation confidence Medium

Genome context

JH425329.1: 1819360-1819418 [-]

Mature abu-miR-196a-5p

• Accession: MIMAT0042146
• Description: Astatotilapia burtoni abu-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-196a-2-3p

• Accession: MIMAT0059864
• Description: Astatotilapia burtoni abu-miR-196a-2-3p mature miRNA
• Sequence: 33 - UGGCUCGGCAACAAGAAACUGC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381