Stem-loop abu-mir-10a-1

Accession

MI0033895

Description

Astatotilapia burtoni abu-mir-10a-1 precursor miRNA

Sequence

1383410 reads, 436798.0 reads per million, 1 experiments

UACCCUGUAGAACCGAAUUUGUgugaugaaaccagauucACAGAUUCGAUUCUAGGGGAGU
...(((.(((((.((((((((((...((....))....)))))))))).))))).)))...

Structure

UAC   G     C          -uga  a 
   CCU UAGAA CGAAUUUGUg    ug a
   ||| ||||| ||||||||||    ||  
   GGG AUCUU GCUUAGACAc    ac a
UGA   G     A          uuag  c 

Annotation confidence High

Genome context

JH425363.1: 2116498-2116558 [-]

Mature abu-miR-10a-5p

• Accession: MIMAT0042039
• Description: Astatotilapia burtoni abu-miR-10a-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-10a-1-3p

• Accession: MIMAT0059780
• Description: Astatotilapia burtoni abu-miR-10a-1-3p mature miRNA
• Sequence: 40 - ACAGAUUCGAUUCUAGGGGAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381