Stem-loop abu-mir-103-1

Accession

MI0033900

Description

Astatotilapia burtoni abu-mir-103-1 precursor miRNA

Sequence

3927 reads, 1240.0 reads per million, 1 experiments

AGCCUCUUUACAGUGCUGCCUUGUcuaaucauguucaAGCAGCAUUGUACAGGGCUAUGA
((((.((.(((((((((((.(((............)))))))))))))).))))))....

Structure

----    U  U           C   Ucuaa 
    AGCC CU UACAGUGCUGC UUG     u
    |||| || ||||||||||| |||      
    UCGG GA AUGUUACGACG Aac     c
AGUA    -  C           -   uugua 

Annotation confidence High

Genome context

JH425502.1: 543663-543722 [+]

Mature abu-miR-103-1-5p

• Accession: MIMAT0059817
• Description: Astatotilapia burtoni abu-miR-103-1-5p mature miRNA
• Sequence: 1 - AGCCUCUUUACAGUGCUGCCUUGU - 24
• Evidence: experimental ; Illumina [1]

Mature abu-miR-103-3p

• Accession: MIMAT0042088
• Description: Astatotilapia burtoni abu-miR-103-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381