miRBase entry: abu-mir-29a-1

Stem-loop abu-mir-29a-1

Accession

MI0033914

Description

Astatotilapia burtoni abu-mir-29a-1 precursor miRNA

Sequence

accguuuuccucugguguucagaguuuccaucaugucUAGCACCAUUUGAAAUCGGUUA
((((.((((...(((((((.(((............))))))))))...)))).))))..

Structure

--    u    cuc       c   guuuc 
  accg uuuc   ugguguu aga     c
  |||| ||||   ||||||| |||      
  UGGC AAAG   ACCACGA Ucu     a
AU    U    UUU       -   guacu

Annotation confidence Not enough data

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Genome context

JH425342.1: 2343503-2343561 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-29a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-29a

Accession	MIMAT0042165
Description	Astatotilapia burtoni abu-miR-29a mature miRNA
Sequence	38 - UAGCACCAUUUGAAAUCGGUUA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381