Stem-loop abu-mir-731

Accession

MI0033916

Description

Astatotilapia burtoni abu-mir-731 precursor miRNA

Sequence

AAUGACACGUUUUCUCCCGGAUUGcugugagcaggaaacgcAACCGGGAAUUUCGUGUCAGCC
..(((((((.....((((((.((((.((.........))))))))))))....)))))))...

Structure

-AA       UUUUC      A    u  gag 
   UGACACG     UCCCGG UUGc gu   c
   |||||||     |||||| |||| ||   a
   ACUGUGC     AGGGCC AAcg ca   g
CCG       -UUUA      -    -  aag 

Annotation confidence Not enough data

Genome context

JH425555.1: 855762-855824 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-731

Mature abu-miR-731-5p

• Accession: MIMAT0042177
• Description: Astatotilapia burtoni abu-miR-731-5p mature miRNA
• Sequence: 1 - AAUGACACGUUUUCUCCCGGAUUG - 24
• Evidence: experimental ; Illumina [1]

Mature abu-miR-731-3p

• Accession: MIMAT0042178
• Description: Astatotilapia burtoni abu-miR-731-3p mature miRNA
• Sequence: 42 - AACCGGGAAUUUCGUGUCAGCC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381