miRBase entry: abu-mir-731

Stem-loop abu-mir-731

Accession

MI0033916

Description

Astatotilapia burtoni abu-mir-731 precursor miRNA

Sequence

AAUGACACGUUUUCUCCCGGAUUGcugugagcaggaaacgcAACCGGGAAUUUCGUGUCAGCC
..(((((((.....((((((.((((.((.........))))))))))))....)))))))...

Structure

-AA       UUUUC      A    u  gag 
   UGACACG     UCCCGG UUGc gu   c
   |||||||     |||||| |||| ||   a
   ACUGUGC     AGGGCC AAcg ca   g
CCG       -UUUA      -    -  aag

Annotation confidence Not enough data

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Genome context

JH425555.1: 855762-855824 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-731

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-731-5p

Accession	MIMAT0042177
Description	Astatotilapia burtoni abu-miR-731-5p mature miRNA
Sequence	1 - AAUGACACGUUUUCUCCCGGAUUG - 24
Evidence	experimental Illumina [1]

Mature abu-miR-731-3p

Accession	MIMAT0042178
Description	Astatotilapia burtoni abu-miR-731-3p mature miRNA
Sequence	42 - AACCGGGAAUUUCGUGUCAGCC - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381