miRBase entry: abu-mir-301a

Stem-loop abu-mir-301a


Accession
MI0033920
Description
Astatotilapia burtoni abu-mir-301a precursor miRNA


Sequence

950 reads, 300.0 reads per million, 1 experiments
ucugacuucauugcacuacuguaucagacaacuagUAGUGCAAUAGUAUUGUCAAAGC
..((((..((((((((((((((........)).))))))))))).)....))))....

Structure
--uc    --uu -           -  auc 
    ugac    c auugcacuacu gu   a
    ||||    | ||||||||||| ||    
    ACUG    G UAACGUGAUga ca   g
CGAA    UUAU A           u  aca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH425403.1: 2097196-2097253 [-]

Database links

Mature abu-miR-301a-3p

Accession MIMAT0042183
Description Astatotilapia burtoni abu-miR-301a-3p mature miRNA
Sequence 36 - UAGUGCAAUAGUAUUGUCAAAGC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381