Stem-loop abu-mir-194b

Accession

MI0033923

Description

Astatotilapia burtoni abu-mir-194b precursor miRNA

Sequence

712 reads, 225.0 reads per million, 1 experiments

UGUAACAGCAUCUCCAUAUGGAaaaacuguggcuuCCAGUGGAGCUGCUGUUAUCUG
.(((((((((.((((((.(((((..........))))))))))).)))))))))...

Structure

--U         U      A     aaac 
   GUAACAGCA CUCCAU UGGAa    u
   ||||||||| |||||| |||||     
   UAUUGUCGU GAGGUG ACCuu    g
GUC         C      -     cggu 

Annotation confidence High

Genome context

JH425325.1: 3831688-3831744 [+]

Mature abu-miR-194b-5p

• Accession: MIMAT0042186
• Description: Astatotilapia burtoni abu-miR-194b-5p mature miRNA
• Sequence: 1 - UGUAACAGCAUCUCCAUAUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-194b-3p

• Accession: MIMAT0059876
• Description: Astatotilapia burtoni abu-miR-194b-3p mature miRNA
• Sequence: 36 - CCAGUGGAGCUGCUGUUAUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381