Stem-loop abu-mir-196b

Accession

MI0033932

Description

Astatotilapia burtoni abu-mir-196b precursor miRNA

Literature search

1 open access papers mention abu-mir-196b
(1 sentences)

Sequence

196 reads, 62.0 reads per million, 1 experiments

UAGGUAGUCUCAUGUUGUUGGGCuauauuauuucucCCACAACACAAAACUGCCUUGA
.(((((((....((((((.(((.............)))))))))....)))))))...

Structure

--U       CUCA      U   Cuaua 
   AGGUAGU    UGUUGU GGG     u
   |||||||    |||||| |||     u
   UCCGUCA    ACAACA CCc     a
AGU       AAAC      -   ucuuu 

Annotation confidence High

Genome context

JH425496.1: 531187-531244 [+]

Mature abu-miR-196b-5p

• Accession: MIMAT0042193
• Description: Astatotilapia burtoni abu-miR-196b-5p mature miRNA
• Sequence: 1 - UAGGUAGUCUCAUGUUGUUGGGC - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-196b-3p

• Accession: MIMAT0059878
• Description: Astatotilapia burtoni abu-miR-196b-3p mature miRNA
• Sequence: 37 - CCACAACACAAAACUGCCUUGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381