miRBase entry: abu-mir-1788

Stem-loop abu-mir-1788


Accession
MI0033942
Description
Astatotilapia burtoni abu-mir-1788 precursor miRNA


Sequence

23 reads, 7.0 reads per million, 1 experiments
GGCUUGUUUUAAGUUGCCUGUGaauuuuaucuguuacacaggcagcuaaagcaagccuuga
(((((((((((.(((((((((((((.......))).)))))))))))))))))))))....

Structure
----           A          -   uu 
    GGCUUGUUUUA GUUGCCUGUG aau  u
    ||||||||||| |||||||||| |||  a
    ccgaacgaaau cgacggacac uug  u
aguu           -          a   uc 


Annotation confidence Not enough data
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Genome context
JH425396.1: 980923-980983 [-]

Database links

Mature abu-miR-1788-5p

Accession MIMAT0042205
Description Astatotilapia burtoni abu-miR-1788-5p mature miRNA
Sequence 1 - GGCUUGUUUUAAGUUGCCUGUG - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381