Stem-loop abu-mir-181a

Accession

MI0033947

Description

Astatotilapia burtoni abu-mir-181a precursor miRNA

Sequence

14075 reads, 4444.0 reads per million, 1 experiments

CACAUUCAUCGCUGUCGGUGGGuuaguaaugccauaaaCUCGCCGGGGGAUGAAUGAC
..((((((((.((..(((((((((.((......)).))))))))))).))))))))..

Structure

CA        G  GU         a  aa 
  CAUUCAUC CU  CGGUGGGuu gu  u
  |||||||| ||  ||||||||| ||   
  GUAAGUAG GG  GCCGCUCaa ua  g
CA        G  --         a  cc 

Annotation confidence High

Genome context

JH425782.1: 356054-356111 [+]

Mature abu-miR-181a-5p

• Accession: MIMAT0042210
• Description: Astatotilapia burtoni abu-miR-181a-5p mature miRNA
• Sequence: 1 - CACAUUCAUCGCUGUCGGUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-181a-3p

• Accession: MIMAT0059879
• Description: Astatotilapia burtoni abu-miR-181a-3p mature miRNA
• Sequence: 39 - CUCGCCGGGGGAUGAAUGAC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381