miRBase entry: abu-mir-212-1

Stem-loop abu-mir-212-1

Accession

MI0033950

Description

Astatotilapia burtoni abu-mir-212-1 precursor miRNA

Sequence

accuuggcuuuagacugcuuacugcuuauacaguaucaaaguacaGUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-a  u     u       c      cuua   agu 
  cc uggcu uagacug uuacug    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUGac    aug   c
UC  U     C       -      ----   aaa

Annotation confidence Not enough data

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Genome context

JH425830.1: 307903-307969 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-212-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-212-3p

Accession	MIMAT0042213
Description	Astatotilapia burtoni abu-miR-212-3p mature miRNA
Sequence	46 - GUAACAGUCUACAGUCAUGGCU - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381