Stem-loop abu-mir-212-1

Accession

MI0033950

Description

Astatotilapia burtoni abu-mir-212-1 precursor miRNA

Sequence

1563 reads, 494.0 reads per million, 1 experiments

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUgac    aug   c
UC  U     C       -      ----   aaa 

Annotation confidence High

Genome context

JH425830.1: 307903-307969 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-212-1

Mature abu-miR-212-1-5p

• Accession: MIMAT0059880
• Description: Astatotilapia burtoni abu-miR-212-1-5p mature miRNA
• Sequence: 1 - ACCUUGGCUUUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-212-3p

• Accession: MIMAT0042213
• Description: Astatotilapia burtoni abu-miR-212-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381