Stem-loop abu-mir-212-2

Accession

MI0033951

Description

Astatotilapia burtoni abu-mir-212-2 precursor miRNA

Sequence

911 reads, 288.0 reads per million, 1 experiments

ACCUUGGCUCUAGACUGCUUACUgcuaaaacuccuccaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((...................))))))))))))).))))).))..

Structure

-A  U     C       C      cuaaaacu 
  CC UGGCU UAGACUG UUACUg        c
  || ||||| ||||||| ||||||        c
  GG ACUGA AUCUGAC AAUgac        u
UC  U     C       -      augaaacc 

Annotation confidence High

Genome context

JH425460.1: 504505-504571 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-212-2

Mature abu-miR-212-2-5p

• Accession: MIMAT0059881
• Description: Astatotilapia burtoni abu-miR-212-2-5p mature miRNA
• Sequence: 1 - ACCUUGGCUCUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-212-3p

• Accession: MIMAT0042213
• Description: Astatotilapia burtoni abu-miR-212-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381