Stem-loop abu-mir-99a

Accession

MI0033952

Description

Astatotilapia burtoni abu-mir-99a precursor miRNA

Sequence

56 reads, 18.0 reads per million, 1 experiments

AGACCUGUAGAUACAAGCUUGUggugucacuuaacacaaguucggaucuacggguuug
(((((((((((..(.((((((((...........)))))))).)..))))))))))).

Structure

-           UA A        gugu 
 AGACCUGUAGA  C AGCUUGUg    c
 |||||||||||  | ||||||||    a
 uuugggcaucu  g uugaacac    c
g           ag c        aauu 

Annotation confidence Not enough data

Genome context

JH425444.1: 108881-108938 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-99a

Mature abu-miR-99a-5p

• Accession: MIMAT0042214
• Description: Astatotilapia burtoni abu-miR-99a-5p mature miRNA
• Sequence: 1 - AGACCUGUAGAUACAAGCUUGU - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381