Stem-loop abu-mir-33-1

Accession

MI0033953

Description

Astatotilapia burtoni abu-mir-33-1 precursor miRNA

Sequence

53 reads, 17.0 reads per million, 1 experiments

GUGCAUUGUAGUUGCAUUGCAUGauccugaagccgagugCAAUGUGUCUGCAGUGCAGUAc
.((((((((((..(((((((((..((........)))))))))))..))))))))))....

Structure

---G          UU         Ga  cug 
    UGCAUUGUAG  GCAUUGCAU  uc   a
    ||||||||||  |||||||||  ||    
    ACGUGACGUC  UGUAACgug  ag   a
cAUG          UG         --  ccg 

Annotation confidence High

Genome context

JH425616.1: 288173-288233 [+]

Mature abu-miR-33-5p

• Accession: MIMAT0042163
• Description: Astatotilapia burtoni abu-miR-33-5p mature miRNA
• Sequence: 1 - GUGCAUUGUAGUUGCAUUGCAUG - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-33-1-3p

• Accession: MIMAT0059863
• Description: Astatotilapia burtoni abu-miR-33-1-3p mature miRNA
• Sequence: 40 - CAAUGUGUCUGCAGUGCAGUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381