miRBase entry: abu-mir-449b

Accession

MI0033960

Description

Astatotilapia burtoni abu-mir-449b precursor miRNA

Sequence

UGGCAGUGUAAUGUUAGCUGACguuucuucagcCAGCUCACACUGCUCUGCUACU
((((((.(((.(((.(((((.(.........).))))).))).))).))))))..

Structure

--      U   A   U     A guu 
  UGGCAG GUA UGU AGCUG C   u
  |||||| ||| ||| ||||| |   c
  AUCGUC CGU ACA UCGAC g   u
UC      U   C   C     c acu

Annotation confidence Not enough data

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Genome context

JH425386.1: 1394859-1394913 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Accession	MIMAT0042224
Description	Astatotilapia burtoni abu-miR-449b-5p mature miRNA
Sequence	1 - UGGCAGUGUAAUGUUAGCUGAC - 22
Evidence	experimental Illumina [1]

Accession	MIMAT0042225
Description	Astatotilapia burtoni abu-miR-449b-3p mature miRNA
Sequence	34 - CAGCUCACACUGCUCUGCUACU - 55
Evidence	experimental Illumina [1]

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381