miRBase entry: abu-mir-449a

Stem-loop abu-mir-449a

Accession

MI0033961

Description

Astatotilapia burtoni abu-mir-449a precursor miRNA

Sequence

AGGCAGUGUCUUGUUAGCUGGUaguuucuuccugugccagcucaccugcugcugcccuc
.(((((((.(..((.((((((((...........)))))))).))..).)))))))...

Structure

--A       U UU  U        guuu 
   GGCAGUG C  GU AGCUGGUa    c
   ||||||| |  || ||||||||    u
   ccgucgu g  ca ucgaccgu    u
cuc       c uc  c        gucc

Annotation confidence Not enough data

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Genome context

JH425386.1: 1394656-1394714 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-449a

Accession	MIMAT0042226
Description	Astatotilapia burtoni abu-miR-449a mature miRNA
Sequence	1 - AGGCAGUGUCUUGUUAGCUGGU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381