Stem-loop abu-mir-10548

Accession

MI0033973

Description

Astatotilapia burtoni abu-mir-10548 precursor miRNA

Sequence

CGUGGCCUGCGGUGCCGUGCaggugcguccgccuccucugCACGGCACCGCAGGCCCCGCCc
((.((((((((((((((((((((.((....))...).))))))))))))))))))).))...

Structure

---  U                   - --u  g 
   CG GGCCUGCGGUGCCGUGCag g   gc u
   || ||||||||||||||||||| |   ||  
   GC CCGGACGCCACGGCACguc c   cg c
cCC  C                   u cuc  c 

Annotation confidence Not enough data

Genome context

JH425794.1: 410640-410701 [+]

Mature abu-miR-10548-5p

• Accession: MIMAT0042238
• Description: Astatotilapia burtoni abu-miR-10548-5p mature miRNA
• Sequence: 1 - CGUGGCCUGCGGUGCCGUGC - 20
• Evidence: experimental ; Illumina [1]

Mature abu-miR-10548-3p

• Accession: MIMAT0042239
• Description: Astatotilapia burtoni abu-miR-10548-3p mature miRNA
• Sequence: 41 - CACGGCACCGCAGGCCCCGCC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381