miRBase entry: abu-mir-10550

Stem-loop abu-mir-10550

Accession

MI0033976

Description

Astatotilapia burtoni abu-mir-10550 precursor miRNA

Sequence

CAGCACAUCGCUGAACUGAAGCCgugauuucagugggCUCAGUUUAGAAGUGUGCCUCG
..((((((..(((((((((.(((............))))))))))))..))))))....

Structure

--CA      CG         A   gugau 
    GCACAU  CUGAACUGA GCC     u
    ||||||  ||||||||| |||      
    CGUGUG  GAUUUGACU Cgg     u
GCUC      AA         -   gugac

Annotation confidence Not enough data

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Genome context

JH425516.1: 686789-686847 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-10550

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-10550-5p

Accession	MIMAT0042242
Description	Astatotilapia burtoni abu-miR-10550-5p mature miRNA
Sequence	1 - CAGCACAUCGCUGAACUGAAGCC - 23
Evidence	experimental Illumina [1]

Mature abu-miR-10550-3p

Accession	MIMAT0042243
Description	Astatotilapia burtoni abu-miR-10550-3p mature miRNA
Sequence	38 - CUCAGUUUAGAAGUGUGCCUCG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381