Stem-loop abu-mir-10550

Accession

MI0033976

Description

Astatotilapia burtoni abu-mir-10550 precursor miRNA

Sequence

CAGCACAUCGCUGAACUGAAGCCgugauuucagugggCUCAGUUUAGAAGUGUGCCUCG
..((((((..(((((((((.(((............))))))))))))..))))))....

Structure

--CA      CG         A   gugau 
    GCACAU  CUGAACUGA GCC     u
    ||||||  ||||||||| |||      
    CGUGUG  GAUUUGACU Cgg     u
GCUC      AA         -   gugac 

Annotation confidence Not enough data

Genome context

JH425516.1: 686789-686847 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-10550

Mature abu-miR-10550-5p

• Accession: MIMAT0042242
• Description: Astatotilapia burtoni abu-miR-10550-5p mature miRNA
• Sequence: 1 - CAGCACAUCGCUGAACUGAAGCC - 23
• Evidence: experimental ; Illumina [1]

Mature abu-miR-10550-3p

• Accession: MIMAT0042243
• Description: Astatotilapia burtoni abu-miR-10550-3p mature miRNA
• Sequence: 38 - CUCAGUUUAGAAGUGUGCCUCG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381