miRBase entry: abu-mir-29d

Stem-loop abu-mir-29d

Accession

MI0033982

Description

Astatotilapia burtoni abu-mir-29d precursor miRNA

Sequence

acugguuucagauggugucuuagaguacaaaauaccaucUAGCACCAUUUGAAAUCGGUGUU
((((((((((((((((((..(((((((.....)))..))))))))))))))))))))))...

Structure

---                  cu    --   c 
   acugguuucagauggugu  uaga  gua a
   ||||||||||||||||||  ||||  ||| a
   UGGCUAAAGUUUACCACG  AUcu  cau a
UUG                  --    ac   a

Annotation confidence Not enough data

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Genome context

JH425342.1: 2343223-2343284 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-29d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-29d

Accession	MIMAT0042249
Description	Astatotilapia burtoni abu-miR-29d mature miRNA
Sequence	40 - UAGCACCAUUUGAAAUCGGUGUU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381