Stem-loop abu-mir-210

Accession

MI0033990

Description

Astatotilapia burtoni abu-mir-210 precursor miRNA

Sequence

847 reads, 267.0 reads per million, 1 experiments

AGCCACUGACUAACGCACAUUGugccaguuuccaguuccaCUGUGCGUGUGACAGCGGCUaa
((((.(((.(..(((((((.((.((.........))..)).)))))))..).))).))))..

Structure

--    A   A UA       U  -u  cag 
  AGCC CUG C  ACGCACA UG  gc   u
  |||| ||| |  ||||||| ||  ||   u
  UCGG GAC G  UGCGUGU ac  ug   u
aa    C   A UG       C  cu  acc 

Annotation confidence High

Genome context

JH425678.1: 622378-622439 [-]

Mature abu-miR-210-5p

• Accession: MIMAT0042256
• Description: Astatotilapia burtoni abu-miR-210-5p mature miRNA
• Sequence: 1 - AGCCACUGACUAACGCACAUUG - 22
• Evidence: experimental ; Illumina [1]

Mature abu-miR-210-3p

• Accession: MIMAT0059889
• Description: Astatotilapia burtoni abu-miR-210-3p mature miRNA
• Sequence: 41 - CUGUGCGUGUGACAGCGGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381