miRBase entry: abu-mir-10565

Stem-loop abu-mir-10565


Accession
MI0034010
Description
Astatotilapia burtoni abu-mir-10565 precursor miRNA


Sequence

6 reads, 2.0 reads per million, 1 experiments
AGAAUUAAAGCUGCGAUGGUCCUgagugaccucauggacgggucgcuuuaauucagug
.((((((((((.((....((((((((....)))).))))..)).))))))))))....

Structure
---A          U  GAUG    -    u 
    GAAUUAAAGC GC    GUCC Ugag g
    |||||||||| ||    |||| ||||  
    cuuaauuucg ug    cagg acuc a
guga          c  --gg    u    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH425624.1: 70796-70853 [-]

Database links

Mature abu-miR-10565-5p

Accession MIMAT0042275
Description Astatotilapia burtoni abu-miR-10565-5p mature miRNA
Sequence 1 - AGAAUUAAAGCUGCGAUGGUCCU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381