Stem-loop mze-mir-183-2

Accession

MI0034014

Description

Metriaclima zebra mze-mir-183-2 precursor miRNA

Sequence

246676 reads, 16385.0 reads per million, 7 experiments

UAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagUGAAUUACCAUAGGGCCAUAAa
((((((..(((((..((((((((..((......))..)))))))))))))....))))))..

Structure

--      --AC     GA        ug  ag 
  UAUGGC    UGGUA  AUUCACUG  ag  c
  ||||||    |||||  ||||||||  ||   
  AUACCG    ACCAU  UAAGUgac  uc  u
aA      GGAU     --        ua  ac 

Annotation confidence High

Genome context

AGTA03000163.1: 2032208-2032269 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-183-2

Mature mze-miR-183-5p

• Accession: MIMAT0042279
• Description: Metriaclima zebra mze-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-183-3p

• Accession: MIMAT0059893
• Description: Metriaclima zebra mze-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381