Stem-loop mze-mir-183-1

Accession

MI0034015

Description

Metriaclima zebra mze-mir-183-1 precursor miRNA

Sequence

198007 reads, 10963.0 reads per million, 7 experiments

UAUGGCACUGGUAGAAUUCACUGucacagcacacuaucagUGAAUUACCAUAGGGCCAUAAa
((((((..(((((..((((((((..............)))))))))))))....))))))..

Structure

--      --AC     GA        ucacag 
  UAUGGC    UGGUA  AUUCACUG      c
  ||||||    |||||  ||||||||       
  AUACCG    ACCAU  UAAGUgac      a
aA      GGAU     --        uaucac 

Annotation confidence High

Genome context

AGTA03000076.1: 164951-165012 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-183-1

Mature mze-miR-183-5p

• Accession: MIMAT0042279
• Description: Metriaclima zebra mze-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACUG - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-183-3p

• Accession: MIMAT0059893
• Description: Metriaclima zebra mze-miR-183-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUAGGGCCAUAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381