Stem-loop mze-mir-182

Accession

MI0034016

Description

Metriaclima zebra mze-mir-182 precursor miRNA

Sequence

88998 reads, 7157.0 reads per million, 7 experiments

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggUGGUUCUAGACUUGCCAACU
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure

-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  AACCGUU   AUCUUG   GUggcc      g
UC       CAG      ---      uaggua 

Annotation confidence High

Genome context

AGTA03000163.1: 2031479-2031542 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-182

Mature mze-miR-182-5p

• Accession: MIMAT0042280
• Description: Metriaclima zebra mze-miR-182-5p mature miRNA
• Sequence: 1 - UUUGGCAAUGGUAGAACUCACA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-182-3p

• Accession: MIMAT0059894
• Description: Metriaclima zebra mze-miR-182-3p mature miRNA
• Sequence: 45 - UGGUUCUAGACUUGCCAACU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381