Stem-loop mze-mir-199-2

Accession

MI0034030

Description

Metriaclima zebra mze-mir-199-2 precursor miRNA

Sequence

735349 reads, 23968.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAuugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure

-C       U        C   U    guc 
  CCAGUGU CAGACUAC UGU CAuu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 

Annotation confidence High

Genome context

AGTA03000234.1: 1309539-1309598 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-199-2

Mature mze-miR-199-5p

• Accession: MIMAT0059905
• Description: Metriaclima zebra mze-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCA - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-199-3p

• Accession: MIMAT0042287
• Description: Metriaclima zebra mze-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381