Stem-loop mze-mir-199-1

Accession

MI0034031

Description

Metriaclima zebra mze-mir-199-1 precursor miRNA

Sequence

1329014 reads, 43109.0 reads per million, 7 experiments

CCCAGUGUUCAGACUACCUGUUCAGgaucuuacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((((((.......))))...))))))))))).)))))))..

Structure

-C       U        C   ---    ga 
  CCAGUGU CAGACUAC UGU   UCAG  u
  ||||||| |||||||| |||   ||||  c
  GGUUACA GUCUGAUG ACA   gguc  u
UU       C        -   ugu    au 

Annotation confidence High

Genome context

AGTA03000118.1: 3411114-3411173 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-199-1

Mature mze-miR-199-5p

• Accession: MIMAT0059905
• Description: Metriaclima zebra mze-miR-199-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUCAG - 25
• Evidence: experimental ; Illumina [1]

Mature mze-miR-199-3p

• Accession: MIMAT0042287
• Description: Metriaclima zebra mze-miR-199-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381