Stem-loop mze-let-7a-3

Accession

MI0034043

Description

Metriaclima zebra mze-let-7a-3 precursor miRNA

Sequence

305569 reads, 13202.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUuggugggugggacugcacccugcucaggugauaaCUAUACAGUCUAUUGCCUUCCc
.(((((((((((((((((((((...((((((((.......))))))))......)))))))))))))))))))))...

Structure

--U                     ---ugg        ac 
   GAGGUAGUAGGUUGUAUAGUU      uggguggg  u
   |||||||||||||||||||||      ||||||||  g
   UUCCGUUAUCUGACAUAUCaa      acucgucc  c
cCC                     uagugg        ca 

Annotation confidence High

Genome context

AGTA03000127.1: 2609310-2609387 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-let-7a-3

Mature mze-let-7a-5p

• Accession: MIMAT0042291
• Description: Metriaclima zebra mze-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7a-3-3p

• Accession: MIMAT0059917
• Description: Metriaclima zebra mze-let-7a-3-3p mature miRNA
• Sequence: 57 - CUAUACAGUCUAUUGCCUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381