Stem-loop mze-mir-27b

Accession

MI0034046

Description

Metriaclima zebra mze-mir-27b precursor miRNA

Sequence

151213 reads, 6256.0 reads per million, 7 experiments

AGAGCUUAGCUGAUUGGUGAACAgugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           G    G       u  uug 
  AGAGCUUAGCU AUUG UGAACAg ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 

Annotation confidence High

Genome context

AGTA03000056.1: 3236163-3236225 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-27b

Mature mze-miR-27b-5p

• Accession: MIMAT0059921
• Description: Metriaclima zebra mze-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAACA - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-27b-3p

• Accession: MIMAT0042292
• Description: Metriaclima zebra mze-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381