Stem-loop mze-let-7a-1

Accession

MI0034047

Description

Metriaclima zebra mze-let-7a-1 precursor miRNA

Sequence

269453 reads, 9342.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUgagaauuacaccccaggagauaaCUGUACAACCUCCUAGCUUUCC
.(((.(((.((((((((((((((...................)))))))))))))).))).)))...

Structure

--U   G   U              agaauuac 
   GAG UAG AGGUUGUAUAGUUg        a
   ||| ||| ||||||||||||||        c
   UUC AUC UCCAACAUGUCaau        c
CCU   G   C              agaggacc 

Annotation confidence High

Genome context

AGTA03000072.1: 2130396-2130462 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mze-let-7a-1

Mature mze-let-7a-5p

• Accession: MIMAT0042291
• Description: Metriaclima zebra mze-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7a-1-3p

• Accession: MIMAT0059916
• Description: Metriaclima zebra mze-let-7a-1-3p mature miRNA
• Sequence: 46 - CUGUACAACCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381