Stem-loop mze-let-7a-5

Accession

MI0034048

Description

Metriaclima zebra mze-let-7a-5 precursor miRNA

Sequence

269294 reads, 9339.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUAGUUcagagugacaccacaggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.((((((((((((((...(((....)))....))..)))))))))))).))).)))...

Structure

--U   G   U            --  -aga   a 
   GAG UAG AGGUUGUAUAGU  Uc    gug c
   ||| ||| ||||||||||||  ||    |||  
   UUC AUC UCCGACAUGUCa  ag    cac a
CCU   G   C            au  agga   c 

Annotation confidence High

Genome context

AGTA03000206.1: 2252604-2252670 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-let-7a-5

Mature mze-let-7a-5p

• Accession: MIMAT0042291
• Description: Metriaclima zebra mze-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7a-5-3p

• Accession: MIMAT0059919
• Description: Metriaclima zebra mze-let-7a-5-3p mature miRNA
• Sequence: 46 - CUGUACAGCCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381