Stem-loop mze-mir-30a-1

Accession

MI0034051

Description

Metriaclima zebra mze-mir-30a-1 precursor miRNA

Sequence

154438 reads, 5987.0 reads per million, 7 experiments

UGUAAACAUCCUUGACUGGAAGCUgguguuaguuucuggggCUUUCAGUCGGAUGUUUGCAGc
(((((((((((..(((((((((((...(.......)...))))))))))))))))))))))..

Structure

--           UU           ggu uu 
  UGUAAACAUCC  GACUGGAAGCU   g  a
  |||||||||||  |||||||||||   |  g
  ACGUUUGUAGG  CUGACUUUCgg   c  u
cG           --           ggu uu 

Annotation confidence High

Genome context

AGTA03000055.1: 1811230-1811292 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-30a-1

Mature mze-miR-30a-5p

• Accession: MIMAT0042295
• Description: Metriaclima zebra mze-miR-30a-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-30a-3p

• Accession: MIMAT0059924
• Description: Metriaclima zebra mze-miR-30a-3p mature miRNA
• Sequence: 42 - CUUUCAGUCGGAUGUUUGCAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381