Stem-loop mze-mir-30a-2

Accession

MI0034052

Description

Metriaclima zebra mze-mir-30a-2 precursor miRNA

Sequence

153354 reads, 5876.0 reads per million, 7 experiments

UGUAAACAUCCUUGACUGGAAGCUgagguuuugacagcgagggCUUUCAGUCGGAUGUUUGCAGc
(((((((((((..(((((((((((...(((.....)))...))))))))))))))))))))))..

Structure

--           UU           gag   u 
  UGUAAACAUCC  GACUGGAAGCU   guu u
  |||||||||||  |||||||||||   ||| g
  ACGUUUGUAGG  CUGACUUUCgg   cga a
cG           --           gag   c 

Annotation confidence High

Genome context

AGTA03000224.1: 1522866-1522930 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-30a-2

Mature mze-miR-30a-5p

• Accession: MIMAT0042295
• Description: Metriaclima zebra mze-miR-30a-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-30a-3p

• Accession: MIMAT0059924
• Description: Metriaclima zebra mze-miR-30a-3p mature miRNA
• Sequence: 44 - CUUUCAGUCGGAUGUUUGCAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381