Stem-loop mze-mir-133a-1

Accession

MI0034057

Description

Metriaclima zebra mze-mir-133a-1 precursor miRNA

Sequence

24912 reads, 1893.0 reads per million, 7 experiments

AGCUGGUAAAAUGGAACCAAAUcaccucuugaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure

--       AA  U  A        accuc 
  AGCUGGU  AA GG ACCAAAUc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaag 

Annotation confidence High

Genome context

AGTA03000035.1: 8758016-8758075 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-133a-1

Mature mze-miR-133a-5p

• Accession: MIMAT0059929
• Description: Metriaclima zebra mze-miR-133a-5p mature miRNA
• Sequence: 1 - AGCUGGUAAAAUGGAACCAAAU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-133a-3p

• Accession: MIMAT0042298
• Description: Metriaclima zebra mze-miR-133a-3p mature miRNA
• Sequence: 39 - UUGGUCCCCUUCAACCAGCUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381