Stem-loop mze-let-7d-1

Accession

MI0034061

Description

Metriaclima zebra mze-let-7d-1 precursor miRNA

Sequence

250686 reads, 9338.0 reads per million, 7 experiments

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaacagcauggagauaaCUGUACAACCUUCUAGCUUUCC
.(((.(((..((((((((((((((.(((..........)))..)).))))))))))))..))).)))...

Structure

--U   G   UU            -  -g   aaua 
   GAG UAG  GGUUGUAUGGUU uc  cau    a
   ||| |||  |||||||||||| ||  |||     
   UUC AUC  CCAACAUGUCaa ag  gua    a
CCU   G   UU            u  ag   cgac 

Annotation confidence High

Genome context

AGTA03000111.1: 70326-70395 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-let-7d-1

Mature mze-let-7d-5p

• Accession: MIMAT0042301
• Description: Metriaclima zebra mze-let-7d-5p mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7d-3p

• Accession: MIMAT0059932
• Description: Metriaclima zebra mze-let-7d-3p mature miRNA
• Sequence: 49 - CUGUACAACCUUCUAGCUUUCC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381