Stem-loop mze-mir-2188

Accession

MI0034064

Description

Metriaclima zebra mze-mir-2188 precursor miRNA

Sequence

48663 reads, 2239.0 reads per million, 7 experiments

AAGGUCCAACCUCACAUGUCCUgugcggcugaaggaagGCUGUGUGAGGUCAGACCUAUC
.(((((..((((((((((.(((.(.(.......).)))).))))))))))..)))))...

Structure

--A     CA          U   g g gg 
   AGGUC  ACCUCACAUG CCU u c  c
   |||||  |||||||||| ||| | |  u
   UCCAG  UGGAGUGUGU Gga a g  g
CUA     AC          C   - g aa 

Annotation confidence High

Genome context

AGTA03000050.1: 849382-849441 [+]

Mature mze-miR-2188-5p

• Accession: MIMAT0042304
• Description: Metriaclima zebra mze-miR-2188-5p mature miRNA
• Sequence: 1 - AAGGUCCAACCUCACAUGUCCU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-2188-3p

• Accession: MIMAT0059935
• Description: Metriaclima zebra mze-miR-2188-3p mature miRNA
• Sequence: 39 - GCUGUGUGAGGUCAGACCUAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381