Stem-loop mze-mir-30c

Accession

MI0034066

Description

Metriaclima zebra mze-mir-30c precursor miRNA

Sequence

190801 reads, 6770.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggCCGGGAGUGGGACUGUUUGCACU
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  ACGUUUGU AGG  GUGAGGGCCg ugg   c
UC        C   --          g   ucu 

Annotation confidence High

Genome context

AGTA03000055.1: 1813641-1813702 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-30c

Mature mze-miR-30c-5p

• Accession: MIMAT0042306
• Description: Metriaclima zebra mze-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCGGC - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-30c-3p

• Accession: MIMAT0059937
• Description: Metriaclima zebra mze-miR-30c-3p mature miRNA
• Sequence: 40 - CCGGGAGUGGGACUGUUUGCACU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381