Stem-loop mze-mir-222-1

Accession

MI0034067

Description

Metriaclima zebra mze-mir-222-1 precursor miRNA

Sequence

342703 reads, 11935.0 reads per million, 7 experiments

UGCUCAGUAGUCAGUGUAGAUCcuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure

--U             -     AUC    gg 
   GCUCAGUAGUCAG UGUAG   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu 

Annotation confidence High

Genome context

AGTA03000041.1: 1144947-1145008 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-222-1

Mature mze-miR-222-1-5p

• Accession: MIMAT0059938
• Description: Metriaclima zebra mze-miR-222-1-5p mature miRNA
• Sequence: 1 - UGCUCAGUAGUCAGUGUAGAUC - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-222-3p

• Accession: MIMAT0042307
• Description: Metriaclima zebra mze-miR-222-3p mature miRNA
• Sequence: 39 - AGCUACAUCUGGCUACUGGGUCUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381