Stem-loop mze-mir-125a-1

Accession

MI0034072

Description

Metriaclima zebra mze-mir-125a-1 precursor miRNA

Sequence

344801 reads, 11639.0 reads per million, 7 experiments

UCCCUGAGACCCUUAACCUGUGAugauaugaaaggucaCAGGUGAGGUCCUUGGGAAC
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGAu    u
  |||| |||  ||||| ||||||||     
  AGGG UUC  GGAGU GGACacug    g
CA    -   CU     -        gaaa 

Annotation confidence High

Genome context

AGTA03000049.1: 4055428-4055485 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-125a-1

Mature mze-miR-125a-5p

• Accession: MIMAT0042310
• Description: Metriaclima zebra mze-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-125a-1-3p

• Accession: MIMAT0059942
• Description: Metriaclima zebra mze-miR-125a-1-3p mature miRNA
• Sequence: 39 - CAGGUGAGGUCCUUGGGAAC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381