Stem-loop mze-mir-30b

Accession

MI0034078

Description

Metriaclima zebra mze-mir-30b precursor miRNA

Sequence

136290 reads, 4645.0 reads per million, 7 experiments

UGUAAACAUCCUACACUCUCAGCUguguugucauggagCUGGGAGAGGGGUGUUUACGCU
.(((((((((((...(((((((((.(((....))).))))))))).)))))))))))...

Structure

--U           ACA         g   u 
   GUAAACAUCCU   CUCUCAGCU ugu g
   |||||||||||   ||||||||| |||  
   CAUUUGUGGGG   GAGGGUCga gua u
UCG           --A         g   c 

Annotation confidence High

Genome context

AGTA03000224.1: 1523201-1523260 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-30b

Mature mze-miR-30b-5p

• Accession: MIMAT0042314
• Description: Metriaclima zebra mze-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature mze-miR-30b-3p

• Accession: MIMAT0059948
• Description: Metriaclima zebra mze-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGAGGGGUGUUUACGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381