Stem-loop mze-let-7e-1

Accession

MI0034084

Description

Metriaclima zebra mze-let-7e-1 precursor miRNA

Sequence

11588 reads, 551.0 reads per million, 7 experiments

UGAGGUAGUAGAUUGAAUAGUUgugggguuuacauccuccuuuugagauaaCUAUACAAUCUACUGUCUUUCc
.((((((((((((((.((((((((((((........)))).......)))))))).))))))))))))))...

Structure

--U              A        -------    uuu 
   GAGGUAGUAGAUUG AUAGUUgu       gggg   a
   |||||||||||||| ||||||||       ||||    
   UUCUGUCAUCUAAC UAUCaaua       ccuc   c
cCU              A        gaguuuu    cua 

Annotation confidence High

Genome context

AGTA03000042.1: 3884463-3884535 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-let-7e-1

Mature mze-let-7e-5p

• Accession: MIMAT0042319
• Description: Metriaclima zebra mze-let-7e-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7e-3p

• Accession: MIMAT0059953
• Description: Metriaclima zebra mze-let-7e-3p mature miRNA
• Sequence: 52 - CUAUACAAUCUACUGUCUUUC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381