Stem-loop mze-mir-214-2

Accession

MI0034090

Description

Metriaclima zebra mze-mir-214-2 precursor miRNA

Sequence

46154 reads, 1715.0 reads per million, 7 experiments

uGCCUAUCUACACUUGCUGUGCAgaauauccuccaaccuguACAGCAGGCACAGACAGGCAGA
(((((.(((...((((((((((((.............))))))))))))...))).)))))..

Structure

--     A   ACA            aauau 
  uGCCU UCU   CUUGCUGUGCAg     c
  ||||| |||   ||||||||||||     c
  ACGGA AGA   GGACGACAuguc     u
AG     C   CAC            caacc 

Annotation confidence Medium

Genome context

AGTA03000234.1: 1311382-1311444 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-214-2

Mature mze-miR-214-2-5p

• Accession: MIMAT0059955
• Description: Metriaclima zebra mze-miR-214-2-5p mature miRNA
• Sequence: 2 - GCCUAUCUACACUUGCUGUGCA - 23
• Evidence: experimental ; Illumina [1]

Mature mze-miR-214-3p

• Accession: MIMAT0042320
• Description: Metriaclima zebra mze-miR-214-3p mature miRNA
• Sequence: 42 - ACAGCAGGCACAGACAGGCAGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381