Stem-loop mze-mir-301b-1

Accession

MI0034092

Description

Metriaclima zebra mze-mir-301b-1 precursor miRNA

Sequence

2946 reads, 251.0 reads per million, 7 experiments

CUUUGACAAUGUUGCACUACUguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGC
((.(((((((((((((((.(((............))).))))))))...))))))).)).

Structure

-  U       ---        A   uacca 
 CU UGACAAU   GUUGCACU CUg     u
 || |||||||   |||||||| |||      
 GA ACUGUUA   UAACGUGA gau     c
C  U       UGA        C   cuuac 

Annotation confidence High

Genome context

AGTA03000002.1: 7169839-7169898 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-301b-1

Mature mze-miR-301b-1-5p

• Accession: MIMAT0059960
• Description: Metriaclima zebra mze-miR-301b-1-5p mature miRNA
• Sequence: 1 - CUUUGACAAUGUUGCACUACU - 21
• Evidence: experimental ; Illumina [1]

Mature mze-miR-301b-3p

• Accession: MIMAT0042324
• Description: Metriaclima zebra mze-miR-301b-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381