Stem-loop mze-mir-1388

Accession

MI0034093

Description

Metriaclima zebra mze-mir-1388 precursor miRNA

Sequence

4474 reads, 304.0 reads per million, 7 experiments

AGGACUGUCCAACCUGAGAAUGgugauuauaggcucaAUCUCAGGUUCGUCAGCCCAUG
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))...

Structure

--A  A   U C         A  -  gau 
   GG CUG C AACCUGAGA UG gu   u
   || ||| | ||||||||| || ||    
   CC GAC G UUGGACUCU ac cg   a
GUA  C   U C         A  u  gau 

Annotation confidence High

Genome context

AGTA03000038.1: 2681025-2681083 [+]

Mature mze-miR-1388-5p

• Accession: MIMAT0042325
• Description: Metriaclima zebra mze-miR-1388-5p mature miRNA
• Sequence: 1 - AGGACUGUCCAACCUGAGAAUG - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-1388-3p

• Accession: MIMAT0059962
• Description: Metriaclima zebra mze-miR-1388-3p mature miRNA
• Sequence: 38 - AUCUCAGGUUCGUCAGCCCAUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381