Stem-loop mze-mir-99b

Accession

MI0034096

Description

Metriaclima zebra mze-mir-99b precursor miRNA

Sequence

232757 reads, 7690.0 reads per million, 7 experiments

AACCCGUAGAUCCGAUCUUGUGgcgaaucugacagcaCAAGCUCGCCUCUGUGGGUCUU
.(((((((((..(((.((((((.............)))))).)))..)))))))))...

Structure

--A         UC   U      gcgaa 
   ACCCGUAGA  CGA CUUGUG     u
   |||||||||  ||| ||||||     c
   UGGGUGUCU  GCU GAACac     u
UUC         CC   C      gacag 

Annotation confidence High

Genome context

AGTA03000089.1: 2743173-2743231 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-99b

Mature mze-miR-99b-5p

• Accession: MIMAT0042328
• Description: Metriaclima zebra mze-miR-99b-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-99b-3p

• Accession: MIMAT0059963
• Description: Metriaclima zebra mze-miR-99b-3p mature miRNA
• Sequence: 38 - CAAGCUCGCCUCUGUGGGUCUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381