Stem-loop mze-mir-194a

Accession

MI0034104

Description

Metriaclima zebra mze-mir-194a precursor miRNA

Sequence

4035 reads, 248.0 reads per million, 7 experiments

UGUAACAGCAACUCCAUGUGGAagcugugucaguuCCAGUGGAGGUGCUGUUACUUG
.(((((((((.((((((.(((((.(((...)))))))))))))).)))))))))...

Structure

--U         A      G     g   u 
   GUAACAGCA CUCCAU UGGAa cug  
   ||||||||| |||||| ||||| ||| g
   CAUUGUCGU GAGGUG ACCuu gac  
GUU         G      -     -   u 

Annotation confidence High

Genome context

AGTA03000099.1: 706637-706693 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-194a

Mature mze-miR-194a-5p

• Accession: MIMAT0042334
• Description: Metriaclima zebra mze-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-194a-3p

• Accession: MIMAT0059971
• Description: Metriaclima zebra mze-miR-194a-3p mature miRNA
• Sequence: 36 - CCAGUGGAGGUGCUGUUACUUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381