Stem-loop mze-let-7c

Accession

MI0034107

Description

Metriaclima zebra mze-let-7c precursor miRNA

Sequence

183074 reads, 5937.0 reads per million, 7 experiments

UGAGGUAGUAGGUUGUAUGGUUuagaauuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCC
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ua ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   UUC AUC UCCAACAUGUCaa   uug  g  c
CCU   G   U             ---   ag gu 

Annotation confidence High

Genome context

AGTA03000089.1: 2743438-2743504 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-let-7c

Mature mze-let-7c-5p

• Accession: MIMAT0042336
• Description: Metriaclima zebra mze-let-7c-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature mze-let-7c-3p

• Accession: MIMAT0059973
• Description: Metriaclima zebra mze-let-7c-3p mature miRNA
• Sequence: 46 - CUGUACAACCUUCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381